Promoter Identification

Documentation and scripts for identifying alternative promoter usage (APU) by integrating multi-omics datasets.

Reports & Notebooks

• Integration of PacBio, TSS and proActiv Data
• Identify Target Region for Dual Guides
• RefTSS and TSS Comparison

Overview

This section contains three main analyses for identifying and characterizing alternative promoters:

• 1A: Integration Analysis - Combines PacBio long-read data, CAGE-seq TSS data, and proActiv predictions

• 1B: Target Region Identification - Defines optimal regions for dual guide targeting

• 1C: RefTSS Comparison - Validates identified promoters against reference annotations

Quick Downloads:

• 1A Integration Report (HTML)

• 1B Target Region Report (HTML)

• 1C refTSS Comparison (HTML)